2019

• Scheer, S., Ackloo, S., Medina, T.S., Schapira, M., Li, F., Ward, J.A., Lewis, A.M., Northrop, J.P., Richardson, P.L., Kaniskan, H.Ü., Shen, Y., Liu, J., Smil, D., McLeod, D., Zepeda-Velazquez, C.A., Luo, M., Jin, J., Barsyte-Lovejoy, D., Huber, K.V.M., De Carvalho, D.D., Vedadi, M., Zaph, C., Brown, P.J. and Arrowsmith C.H. 2019. A chemical biology toolbox to study protein methyltransferases and epigenetic signaling. Nat. Commun. ​10 (1):19. doi: 10.1038/s41467-018-07905-4.

2018

• Cooper, L., Hailes, L., Sheikh, A., Zaph, C., Belz, G.T., Groom, J.R. and Good-Jacobson, K.L. 2018. Assessing the role of the T-box transcription factor Eomes in B cell differentiation during either Th1 or Th2 cell-biased responses. PLoS One. 13 (12):e0208343. doi: 10.1371/journal.pone.0208343.
  
• Burrows, K., Antignano, F., Chenery, A.,  Bramhall, M., Korinek, V., Underhill, T.M. and Zaph, C. 2018. HIC1 links retinoic acid signalling to group 3 innate lymphoid cell-dependent regulation of intestinal immunity and homeostasis. PLoS Pathogens ​14 (2):e1006869. doi: 10.1371/journal.ppat.1006869.​
• Judson, R.N., Quarta, M., Oudhoff, M.J., Soliman, H., Yi, L., Chang, C.K., Loi, G., Vander Werff, R., Cait, A., Hamer, M., Blonigan, J., Paine, P., Doan, L.T.N., Groppa, E., He, W., Su, L., Zhang, R.H., Xu, P., Eisner, C., Low, M., Barta, I., Lewis, C.B., Zaph, C.,  Karimi, M.M., Rando, T.A. and Rossi, F.M. 2018. Inhibition of Methyltransferase Setd7 Allows the In Vitro Expansion of Myogenic Stem Cells with Improved Therapeutic Potential. Cell Stem Cell 22 (2):177-190.e7. doi: 10.1016/j.stem.2017.12.010.
• Cait, A., Hughes, M.R., Antignano, F., Cait, J., Dimitriu, P.A., Maas, K.R., Reynolds, L.A, Hacker, L., Mohr, J., Finlay, B.B., Zaph, C., McNagny, K.M. and Mohn, W.W.. 2018. Microbiome-driven allergic lung inflammation is ameliorated by short-chain fatty acids. Mucosal Immunol. 11 (3):785–795. doi: 10.1038/mi.2017.75.

2017

• Burrows, K., Antignano, F., Bramhall, M., Chenery, A.,  Scheer, S., Korinek, V., Underhill, T.M. and Zaph, C. 2017. The transcriptional repressor HIC1 regulates intestinal immune homeostasis. Mucosal Immunol. ​ePub 22 March 2017. doi: 10.1038/mi.2017.17. PDF
• ​Bramhall, M. and Zaph, C. 2017. Mastering gut permeabililty: New roles for old friends. Eur. J. Immunol. 47(2): 236–239. doi: 10.1002/eji.201646842. ​PDF
• Scheer, S., Medina, T.S., Murison, A., Taves, M.D., Antignano, F., Chenery A., Soma, K.K., Perona-Wright, G., Lupien, M., Arrowsmith, C.H., De Carvalho, D.D. and Zaph, C. 2017. Early life antibiotic treatment enhances the pathogenicity of CD4+ T cells during intestinal inflammation. J. Leuk. Biol.​ 101 (4): 893–900. doi: 10.1189/jlb.3MA0716-334RR. PDF​
• Zaph, C. and Scheer, S. 2017. The lysine methyltransferase G9a in immune cell differentiation and function.  Front. Immunol. doi: 10.3389/fimmu.2017.00429. PDF
• Lo BC, Gold MJ, Scheer S, Hughes MR, Cait J, Debruin E, Chu FSF, Walker DC, Soliman H, Rossi FM, Blanchet MR, Perona-Wright G, Zaph C, McNagny KM. 2017. Loss of Vascular CD34 Results in Increased Sensitivity to Lung Injury. Am. J. Respir. Cell Mol. Biol. ePub 6 July 2017. doi: 10.1165/rcmb.2016-0386OC. 

2016

• Lo, B.C., Gold, M.J., Hughes, M.R., Antignano, F., Valdez, Y., Zaph, C., Harder, K.W. and McNagny, K.M. 2016. The orphan nuclear receptor ROR alpha and group 3 innate lymphoid cells drive fibrosis in a mouse model of Crohn's disease. Science Immunol. 1 (3): eaaf8864. doi: 10.1126/sciimmunol.aaf8864. PDF
• Oudhoff, M.J., Antignano, F., Chenery, A.L., Burrows, K., Redpath, S.A., Braam, M.J.S., Perona-Wright, G.P. and Zaph, C. 2016. Intestinal Epithelial Cell-Intrinsic Deletion of Setd7 Identifies Role for Developmental Pathways in Immunity to Helminth Infection. PLoS Pathogens 12 (9): e1005876. doi: 10.1371/journal.ppat.1005876. PDF
• Chenery, A.L., Antignano, F., Hughes, M.R., Burrows, K., McNagny, K.M. and Zaph, C. 2016. Chronic Trichuris muris infection alters hematopoiesis and causes IFN-γ-expressing T cell accumulation in the mouse bone marrow. Eur. J. Immunol. ​46 (11):2587–2596. doi: 10.1002/eji.201646326. ​PDF
• Antignano, F., Braam, M.J.S., Hughes, M.R., Chenery, A., Burrows, K., Gold, M.J., Oudhoff, M.J., Rattray, D., Halim, T., Cait, A.M., Takei, F., Rossi, F.M.V., McNagny, K.M. and Zaph, C. 2016. G9a regulates group 2 innate lymphoid cell development by repressing the group 3 innate lymphoid cell program. J. Exp. Med. 213 (7): 1153–1162. ​doi: 10.1084/jem.20151646. ​PDF
• Oudhoff, M.J., Braam, M.J.S., Freeman, S.A., Wong, D., Rattray, D.G., Wang, J., Antignano, F., Snyder, K., Refaeli, I., Hughes, M.R., McNagny, K.M., Gold, M.R., Arrowsmith, C.H., Sato, T., Rossi, F.M.V., Tatlock, J.H., Owen, D.R., Brown, P.J. and Zaph, C. 2016. SETD7 controls intestinal regeneration and tumorigenesis by regulating Wnt/b-Catenin and Hippo/YAP signaling. Dev. Cell 37 (1): 47–57. doi: 10.1016/j.devcel.2016.03.002. ​PDF
• Chenery, A., Antignano, F., Burrows, K., Scheer, S., Perona-Wright, G. and Zaph, C. 2016. Low dose intestinal Trichuris muris infection alters the lung immune microenvironment and can suppress allergic airway inflammation. Infect. Immun. 84 (2): 491–501. doi:10.1128/IAI.01240-15. PDF
• Gold, M.J., Antignano, F., Hughes, M.R., Zaph, C. and McNagny, K.M. 2016. Dendritic cell expression of SHIP-1 regulates Th2 immunity to helminth infection in mice. Eur. J. Immunol. 46 (1): 122-130. doi: 10.1002/eji.201545628. PDF

2015

• Bergstrom K.S., Morampudi V., Chan J.M., Bhinder G., Lau J., Yang H., Ma C., Huang T., Ryz N., Sham H.P., Zarepour M., Zaph C., Artis D., Nair M. and Vallance B.A. 2015. Goblet Cell Derived RELM-β Recruits CD4+ T Cells during Infectious Colitis to Promote Protective Intestinal Epithelial Cell Proliferation. PLoS Pathog. 11 (8): e1005108. doi: 10.1371/journal.ppat.1005108. PDF

• Gold, M.J., Hughes, M.R., Antignano, F., Hirota, J.A., Zaph, C. and McNagny, K.M. 2015. Lineage-specific regulation of allergic airway inflammation by the lipid phosphatase SHIP-1. J. Allergy Clin. Immunol. 136 (3): 725–736. doi: 10.1016/j.jaci.2015.01.019. PDF

• Antignano, F. and Zaph, C. 2015. Regulation of CD4 T-cell differentiation and inflammation by repressive histone methylation. Immunol. Cell Biol. 93 (3): 245–52. doi: 10.1038/icb.2014.115. PDF

2014

• Zaph, C., Cooper, P.J. and Harris, N.L. 2014. Mucosal immune responses following intestinal nematode infection. Parasite Immunol. 36 (9): 439–452. doi:10.1111/pim.12090. PDF
• Barsyte-Lovejoy, D.*, Li, F.*, Oudhoff, M.J.*, Tatlock, J.H.*, Dong, A., Zeng, H., Wu, H., Freeman, S.A., Schapira, M., Senisterra, G.A., Kuznetsova, E., Marcellus, R., Allali-Hassani, A., Kennedy, S., Lambert, J.-P., Couzens, A.L., Aman, A., Gingras, A.-C., Al-Awar, R., Fish, P.V., Gerstenberger, B.S., Roberts, L., Benn, C.L., Grimley, R.L., Braam, M.J.S., Rossi, F.M.V., Sudol, M., Brown, P.J., Bunnage, M.E., Owen, D.R., Zaph, C., Vedadi, M. and Arrowsmith, C.H. 2014. (R)-PFI-2 is a potent and selective inhibitor of SETD7 methyltransferase activity in cells. Proc. Natl. Acad. Sci U.S.A. 111 (35): 12853–12858. doi:10.1073/pnas.1407358111. PDF

• Antignano, F., Burrows, K., Hughes, M.L., Han, J.M., Kron, K.J., Penrod, N.M., Oudhoff, M.J., Wang, S.K.H., Min, P.H., Gold, M.J., Chenery, A., Braam, M.J.S., Fung, T.C., Rossi, F.M.V., McNagny, K.M., Arrowsmith, C.H., Lupien, M., Levings, M.K. and Zaph, C. 2014. Methyltransferase G9A regulates T cell differentiation during murine intestinal inflammation. J. Clin. Invest. 124 (5):1945–1955. doi:10.1172/JCI69592. PDF   
• Gold, M.J., Antignano, F., Halim, T.Y.F., Blanchet, M.-R., Zaph, C., Takei, F. and McNagny, K.M. 2014. Group 2 Innate Lymphoid Cells Facilitate Sensitization to Local but not Systemic Th2-Inducing Allergen Exposures. J. Allergy Clin. Immunol. 133 (4):1142–1148. doi: 10.1016/j.jaci.2014.02.033. PDF

2013

• Mullaly, S.C., Oudhoff, M.J., Min, P.H., Burrows, K., Antignano, F. Rattray, D.G., Chenery, A., McNagny, K.M., Ziltener, H.J. and Zaph, C. 2013. Requirement for Core 2 O-Glycans for Optimal Resistance to Helminth Infection. PLoS ONE 8 (3): e60124. doi: 10.1371/journal.pone.0060124. PDF
• Oudhoff, M.J., Freeman, S.A., Couzens, A.L., Antignano, F., Min, P.H., Northrop, J.P., Burrows, K., Chenery, A., Lehnertz, B., Barsyte-Lovejoy, D., Vedadi, M, Arrowsmith, C.H., Nishina, H., Gold, M.R., Rossi, F.M.V., Gingras, A.-C. and Zaph, C. 2013. Regulation of the Hippo pathway through Set7-dependent methylation of Yap. Dev. Cell 26 (2): 188–194. doi: 10.1016/j.devcel.2013.05.025. PDF
• Chenery, A., Burrows, K., Antignano, F. Underhill, T.M., Petkovich, M. and Zaph, C. 2013. The retinoic acid-metabolizing enzyme Cyp26b1 regulates CD4 T cell differentiation and function. PLoS ONE 8 (8): e72308. doi: 10.1371/journal.pone.0072308. PDF
• Antignano, F. and Zaph, C. 2013. Another Brick in the Wall: Innate Lymphoid Cells of the Intestine. Curr. Immunol. Rev. 9 (3): 111–117. PDF

2012

• Hadidi, S.*, Antignano, F.*, Hughes, M.L.*, Wang, S.K.H, Snyder, K., Sammis, G.M., Kerr, W.G., McNagny, K.M. and Zaph, C. 2012. Myeloid cell-specific expression of Ship1 regulates IL-12 production and immunity to helminth infection. Mucosal Immunol. 5 (5): 535–543. doi: 10.1038/mi.2012.29. PDF

2011

• Carvalho, L.P., Petritus, P.M., Trochtenberg, A.L., Zaph, C., Hill, D.A., Artis, D. and Scott, P. 2011. Lymph node hypertrophy following Leishmania major infection is dependent upon TLR9. J. Immunol. 188 (3):1394–401. doi: 10.4049/jimmunol.1101018. PDF
• Antignano, F., Mullaly, S.C., Burrows, K. and Zaph, C. 2011. Trichuris muris: a model of type 2 immunity and inflammation in the gut. J. Vis. Exp. 51: 2774. doi: 10.3791/2774. 
• Mullaly, S.C., Burrows, K., Antignano, F. and Zaph, C. 2011. Assessing the role of CD103 in immunity to an intestinal helminth parasite. PLoS ONE 6 (5): e19580. doi: 10.1371/journal.pone.0019580. PDF

2010

• Zaph, C. 2010. Which species are in your feces? J. Clin. Invest. 120 (12): 4182–4185. doi:10.1172/JCI45263. PDF
• Sonnenberg, G.F., Nair, M.G., Kirn, T.J., Zaph, C., Fouser, L.A., and Artis, D. 2010. Pathological versus protective functions of IL-22 in airway inflammation are regulated by IL-17A. J. Exp. Med. 207 (6): 1293–1305. doi: 10.1084/jem.20092054. PDF
• Lehnertz, B., Northrop, J.P., Antignano, F., Burrows, K., Hadidi, S., Mullaly, S.C., Rossi, F.M.V. and Zaph, C. 2010. Activating and inhibitory functions for the histone lysine methyltransferase G9a in T helper cell differentiation and function. J. Exp. Med. 207 (5): 915–922. doi: 10.1084/jem.20100363. PDF
• Naus, S.*, Blanchet, M.R.*, Gossens, K., Zaph, C., Bartsch, J.W., McNagny, K.M. and Ziltener, H.J. 2010. The Metalloprotease-Disintegrin ADAM8 is Essential for the Development of Experimental Asthma. Am. J. Respir. Crit. Care Med. 181 (12): 1318–1328. doi:10.1164/rccm.200909-1396OC. PDF

2009

• Troy, A.E., Zaph, C., Du, Y., Taylor, B.C., Guild, K.J., Hunter, C.A., Saris, C.J.M. and Artis, D. 2009. IL-27 Regulates Homeostasis of the Intestinal CD4+ Effector T Cell Pool and Limits Intestinal Inflammation in a Murine Model of Colitis. J. Immunol. 183 (3): 2037–2044. doi:10.4049/jimmunol.0802918. PDF
• Perrigoue, J.G., Saenz, S.A., Allenspach, E.J., Taylor, B.C., Giacomin, P.R., Zaph, C., Nair, M.G., Du, Y., Comeau, M.R., Laufer, T.M. and Artis, D. 2009. MHC class II-dependent basophil-CD4+ T cell interactions promote Th2 cytokine-dependent immunity. Nat. Immunol. 10 (7): 697–705. doi:10.1038/ni.1740. PDF
• Perrigoue, J.G., Zaph, C., Guild, K., Du, Y. and Artis, D. 2009. IL-31-IL-31R interactions limit the magnitude of Th2 cytokine-dependent immunity and inflammation following intestinal helminth infection. J. Immunol. 182 (10): 6088–6094. doi:10.4049/jimmunol.0802459. PDF
• Nair, M.G., Du, Y., Perrigoue, J.G., Zaph, C., Taylor, J.J., Goldschmidt, M., Swain, G.P., Yancopoulos, G.D., Valenzuela, D.M., Murphy, A., Karow, M., Stevens, S., Pearce, E.J. and Artis, D. 2009. Alternatively activated macrophage-derived RELM–a is a negative regulator of type 2 inflammation in the lung. J. Exp. Med. 206 (4): 937–952. doi: 10.1084/jem.20082048. PDF
• Taylor, B.C., Zaph, C., Troy, A.E., Du, Y., Guild, K.J., Comeau, M.R. and Artis, D. 2009. TSLP regulates intestinal immunity and inflammation in mouse models of helminth infection and colitis.  J. Exp. Med. 206 (3): 655–667. doi: 10.1084/jem.20081499. PDF

2008

• Perona-Wright, G., Mohrs, K., Zaph, C., Taylor, J., Artis, D., Pearce, E.J. and Mohrs, M. 2008. Cutting Edge: Helminth infection induces IgE production in the absence of m or d chain expression. J. Immunol. 181 (10): 6697-6701. PDF
• Zaph, C., Du, Y., Kobuley, D.E., Guild, K.J., Taylor, B.C., Perrigoue, J.G., Nair, M.G., Saenz, S.A., Troy, A.E., Yu, Y., Kastelein, R.A. Cua, D.J. and Artis, D. 2008. Commensal-dependent expression of IL-25 regulates the IL-23/IL-17 axis in the intestine. J. Exp. Med. 205 (10): 2191–2198. doi: 10.1084/jem.20080720. PDF
• Nair, M.G., Guild, K.J., Du, Y., Zaph, C., Yancopoulos, G.D., Valenzuela, D.M., Murphy, A., Stevens, S., Karow, M. and Artis, D. 2008. Goblet Cell-Derived RELMb Augments CD4+ T Cell Production of IFN-g and Infection-Induced Intestinal Inflammation. J. Immunol. 181 (7): 4709–4715. PDF
• Pakpour, N., Zaph, C. and Scott, P. 2008. The Central Memory CD4+ T cell Population Generated during Leishmania major Infection Requires IL-12 to Produce IFN-g. J. Immunol. 180 (12): 8299–8305. PDF

2007

• Perrigoue, J.G.*, Li, J.*, Zaph, C., Goldschmidt, M., Scott, P., Pearce, E.J., Ghilardi, N. and Artis, D. 2007. IL-31–IL-31R interactions negatively regulate type 2 inflammation in the lung. J. Exp. Med. 204 (3): 481–487. doi: 10.1084/jem.20061791. PDF
• Zaph, C., Troy, A.E., Taylor, B.C., Berman-Booty, L.D., Guild, K.J., Du, Y., Yost, E.A., Gruber, A.D., May, M.J., Greten, F.R., Eckmann, L., Karin, M. and Artis, D. 2007. Epithelial cell-intrinsic IKKb expression regulates intestinal immune homeostasis. Nature 446 (7135): 552–556. doi: 10.1038/nature05590. PDF

2006

• Wilson, E.H., Zaph, C., Mohrs, M., Welcher, A., Sin, J., Artis, D. and Hunter, C.A. 2006. B7RP-1-ICOS Interactions Are Required for Optimal Infection-Induced Expansion of CD4+ Th1 and Th2 Responses. J. Immunol. 177 (4): 2365–2372. PDF
• Zaph, C., Rook, K.A., Goldschmidt, M., Mohrs, M., Scott, P. and Artis, D. 2006. Persistence and Function of Central and Effector Memory CD4+ T Cells Following Infection with a Gastrointestinal Helminth. J. Immunol. 177 (1): 511–518. PDF
• Owyang, A.M.*, Zaph, C.*, Wilson, E.H., Guild, K.J., McClanahan, T., Miller, H.R.P., Cua, D.J., Goldschmidt, M., Hunter, C.A., Kastelein, R.A. and Artis, D. 2006. IL-25 regulates type 2 cytokine-dependent immunity and chronic inflammation in the gastrointestinal tract. J. Exp. Med. 203 (4): 843–849. doi: 10.1084/jem.20051496. PDF

2005

• Artis, D., Kane, C.M., Fiore, J., Zaph, C., Shapira, S., Joyce, K., MacDonald, A., Hunter, C.A., Scott, P. and Pearce, E.J. 2005. Dendritic Cell-Intrinsic Expression of NF-kB1 Is Required to Promote Optimal Th2 Cell Differentiation. J. Immunol. 174 (11): 7154–7159. PDF

2004

• Zaph, C.*, Uzonna, J.*, Beverley, S.M. and Scott, P. 2004. Central memory T cells mediate long-term immunity to Leishmania major in the absence of persistent parasites. Nat. Med. 10 (10): 1104–1110. doi:10.1038/nm1108. PDF
• Scott, P., Artis, D., Uzonna, J. and Zaph, C. 2004. The development of effector and memory T cells in cutaneous leishmaniasis: the implications for vaccine development. Immunol. Rev. 201: 318–338. doi: 10.1111/j.0105-2896.2004.00198.x. PDF

2003

• Zaph, C. and Scott, P. 2003. Th1-Cell Mediated Resistance to Cutaneous Infection with Leishmania major is Independent of P- and E-Selectins. J. Immunol. 171 (9): 4726–4732. PDF
• Zaph, C. and Scott, P. 2003. Interleukin-12 regulates chemokine gene expression during the early immune response to Leishmania major. Infect. Immun. 71 (3): 1587–1589.  doi: 10.1128/IAI.71.3.1587-1589.2003. PDF